Cross Beta Crystal Structures

coordinates and interactive illustrations of the biological assemblies of peptide segments from amyloidogenic proteins
with Jmol, but not yet ready


Shilpa Sambahivan, Rebecca Nelson, Magdalena Ivanova, Michael R. Sawaya, Stuart Sievers, Michael J. Thompson, Melinda Balbirnie, Marcin Apostol, Jed Wiltzius, Heather McFarlane, Anders O. Madsen, Christian Riekel, David Eisenberg.

You can get the chime plugin from http://www.mdli.com/products/framework/chime/index.jsp

A-beta protein (human)
DAEFRHDSGY EVHHQKLVFF AEDVGSNKGA IIGLMVGGVV IA
1.......10 11......20 21......30 31......40 42

sequence
residues
PDB ID
3D interactive demo
coordinates
KLVFFA
(form 1)
16-21 2Y2A asymmetric unit
unit cell
many unit cells
pair of sheets
KLVFFA
(form 2)
16-21 3OW9 asymmetric unit
unit cell
many unit cells
pair of sheets
KLVFFA
(form 3)
16-21 2Y29 asymmetric unit
unit cell
many unit cells
pair of sheets
KLVFFA
(orange G)
16-21 3OVJ asymmetric unit
unit cell
many unit cells
pair of sheets
NKGAII
(interface A)
27-32 3Q2X asymmetric unit
unit cell
many unit cells
pair of sheets
NKGAII
(interface B)
27-32 3Q2X asymmetric unit
unit cell
many unit cells
pair of sheets
GAIIGL 29-34 3PZZ asymmetric unit
unit cell
many unit cells
pair of sheets
AIIGLM 30-35 2Y3J asymmetric unit
unit cell
many unit cells
pair of sheets
MVGGVV
(form 1)
35-40 2ONA asymmetric unit
unit cell
many unit cells
pair of sheets
MVGGVV
(form 2)
35-40 2OKZ asymmetric unit
unit cell
many unit cells
pair of sheets
MVGGVVIA
(form 1)
35-42 2Y3K asymmetric unit
unit cell
many unit cells
pair of sheets
MVGGVVIA
(form 2)
35-42 2Y3L asymmetric unit
unit cell
many unit cells
pair of sheets
GGVVIA 37-42 2ONV asymmetric unit
unit cell
many unit cells
pair of sheets


Insulin (human)
sequence
residues
PDB ID
3D interactive demo (chime)
coordinates
LYQLEN
GGVVIA GGVVIA asymmetric unit
unit cell
many unit cells
pair of sheets
VEALYL GGVVIA GGVVIA asymmetric unit
unit cell
many unit cells
pair of sheets


RNase (bovine)
sequence
residues
PDB ID
3D interactive demo (chime)
coordinates
SSTSAA
GGVVIA GGVVIA asymmetric unit
unit cell
many unit cells
pair of sheets


Sup35 (yeast)
sequence
residues
PDB ID
3D interactive demo (chime)
coordinates
GNNQQNY
(form 1)
GGVVIA GGVVIA asymmetric unit
unit cell
many unit cells
pair of sheets
GNNQQNY
(form 2)
GGVVIA GGVVIA asymmetric unit
unit cell
many unit cells
pair of sheets
NNQQNY GGVVIA GGVVIA asymmetric unit unit cell
many unit cells
pair of sheets
NNQQ
(form 1)
GGVVIA GGVVIA asymmetric unit unit cell
many unit cells
pair of sheets
NNQQ
(form 2)
GGVVIA GGVVIA asymmetric unit unit cell
many unit cells
pair of sheets
 


Tau protein (human)
sequence
residues
PDB ID
3D interactive demo (chime)
coordinates

VQIVYK
GGVVIA GGVVIA vqivyk asymmetric unit
unit cell
many unit cells
pair of sheets