Preparations for Model Building
Structural Molecular Biology Laboratory, ChemM230D
Michael R. Sawaya, Duilio Cascio
1) Print out the powerpoint presentation modelbuilding_handout.ppt and distribute as handouts.

2) Copy the necessary files to the student's directory.  Look in the FILES subdirectory
 /auto_nfs/data1/users/sawaya/HTML/m230d/Modelbuilding/FILES

COREY:Modelbuilding[976] ls FILES
total 5022
-rw-r--r--    1 sawaya   eisenber     4312 Feb 22 23:45 alpha.pdb
-rw-r--r--    1 sawaya   eisenber   144520 Feb 22 23:45 answer.pdb
-rwxr-xr-x    1 sawaya   eisenber     3132 Feb 22 23:45 copy_it.com
-rw-r--r--    1 sawaya   eisenber       75 Feb 22 23:45 dmacro
-rw-r--r--    1 sawaya   eisenber      782 Feb 22 23:45 drill.odb
-rw-r--r--    1 sawaya   eisenber       89 Feb 22 23:45 mapmove
-rw-r--r--    1 sawaya   eisenber      675 Feb 22 23:45 mbmacro
-rw-r--r--    1 sawaya   eisenber    87503 Feb 22 23:45 polyala.pdb
-rw-r--r--    1 sawaya   eisenber   334987 Feb 22 23:45 prok2.odb
-rw-r--r--    1 sawaya   eisenber  4553216 Feb 22 23:45 prok2.omap
-rw-r--r--    1 sawaya   eisenber      301 Feb 22 23:45 prok.pir



Mike's comment for next year- make a higher resolution representation of the 20 amino acids.
Also, if you can bring a model for illustrating the Newman projection and rotamers, it would help.






Back to phasing experiment

Back to CHEM M230D course syllabus 


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