Preparations for Model Building
Structural Molecular Biology Laboratory, ChemM230D
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Michael R. Sawaya, Duilio Cascio
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1) Print out
the powerpoint presentation modelbuilding_handout.ppt and distribute as handouts.
2) Copy the necessary files to the student's directory. Look in the
FILES subdirectory
/auto_nfs/data1/users/sawaya/HTML/m230d/Modelbuilding/FILES
COREY:Modelbuilding[976] ls FILES
total 5022
-rw-r--r-- 1 sawaya eisenber
4312 Feb 22 23:45 alpha.pdb
-rw-r--r-- 1 sawaya eisenber 144520
Feb 22 23:45 answer.pdb
-rwxr-xr-x 1 sawaya eisenber
3132 Feb 22 23:45 copy_it.com
-rw-r--r-- 1 sawaya eisenber
75 Feb 22 23:45 dmacro
-rw-r--r-- 1 sawaya eisenber
782 Feb 22 23:45 drill.odb
-rw-r--r-- 1 sawaya eisenber
89 Feb 22 23:45 mapmove
-rw-r--r-- 1 sawaya eisenber
675 Feb 22 23:45 mbmacro
-rw-r--r-- 1 sawaya eisenber
87503 Feb 22 23:45 polyala.pdb
-rw-r--r-- 1 sawaya eisenber 334987
Feb 22 23:45 prok2.odb
-rw-r--r-- 1 sawaya eisenber 4553216
Feb 22 23:45 prok2.omap
-rw-r--r-- 1 sawaya eisenber
301 Feb 22 23:45 prok.pir
Mike's comment for next year- make a higher resolution representation of the
20 amino acids.
Also, if you can bring a model for illustrating the Newman projection and
rotamers, it would help.
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