Enzymes provide proximity and proper orientation for substrates to interact. This lowers the
activation energy of a chemical reaction, thereby accelerating its rate. Oxidoreductases
constitute the largest class of enzymes. They catalyze the transfer of electrons from one
molecule to another. Within this class of enzymes, hydrogen atoms and hydride ions are
the most common groups transferred. Alcohol dehydrogenase (ADH) oxidizes alcohol
into aldehyde or ketone through the reduction of NAD+ to NADH. In humans, human
beta1 alcohol dehydrogenase is mainly used to convert ethanol into acetaldehyde. Human
ADH also exists in beta2 and beta3 forms, in which cases Arg369 is replaced with histidine
and cysteine, respectively (Figure 1). The beta1 isozyme is the most potent, party due to its strong
interaction with the pyrophosphate group of the cofactor.
Crystal structures reveal that the enzyme is dimeric and each ADH subunit has two zincs: one
structural and one catalytic. (1, 3) The metal provides electrostatic stabilization to the complex
by interacting with the alcohol oxygen, making the oxygen more nucleophilic and its proton
more acidic. The catalytic zinc coordination involves five atoms: two sulfur atoms from Cys46,
and Cys174, His67, a water molecule, and the alcohol oxygen. The human beta1 alcohol
dehydrogenase also contains two other major domains: alcohol-binding domain
and NAD+-binding domain. Besides interacting with the zinc, the substrate additionally
binds to the enzyme via Phe93, Leu57, and Leu116. (2) This three-point attachment results
in substrate stereo specificity. Finally, NAD+ binds to the enzyme via His51, Thr48, Arg47,
Gly204, Val 203, Lys228, Thr274, Ile269, Arg271; these residues surround the
NAD+ molecule. (2; Figure 2).
Like many catalytic schemes, the reaction of Human Beta1 Alcohol Dehydrogenase involves
a series of general base and general acid steps in order to transfer a hydride ion from the alcoholic
substrate to a NAD+ molecule. In the first step, His51 accepts a proton from NAD+, which then
accepts a proton from Thr48. This threonine, also bound to the alcohol and now negatively charged,
deprotonates the alcohol. Since this oxidation is concerted, a hydride ion is eventually added to the
pyridinic nitrogen in the NAD+ molecule, reducing it NADH. (2) The Human Alcohol Dehydrogenase
facilitates the oxidation of alcohol by holding the reactants in close proximity and by supplying favorable
interactions, in keeping with standard models for enzymatic catalysis.
References
(1) Buhler, et al (1984). Human alcohol dehydrogenase: structural differences between
the beta and gamma subunits suggest parallel duplications in isoenzyme evolution and
predominant expression of separate gene descendants in livers of different mammals.
Proc Natl Acad Sci USA 81, 6320-24.
(2) Hurley, et al. (1991). Structure of human β1β1 alcohol dehydrogensae:
Catalytic effects of non-active-site substitutions. Proc Natl Acad Sci USA 88, 8149-53.
(3) Davis, et al. (1996). X-ray Structure of Human β3β3 Alcohol
Dehydrogenase J. Biol Chem. 271, 17057-61.
(4) PDBID 1deh
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Figure 1. Arg369 of beta1 is represented here as the yellow
spherical side chain. Arginine is replaced by histidine and cysteine (and two water molecules)
in beta2 and beta3, respectively. While different forms have similar shapes, beta1 has the
highest kcat value and lowest KM value, presumably because
the positively charged arginine interacts favorably with negative charges on the ADH coenzyme.
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Figure 2. The NAD+-binding domain is shown here in blue side chains. Since NAD+ is a
relatively bulky molecule, more residues are needed to surround the substrate.
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Figure 3. An animated view of Human Beta1 Alcohol Dehydrogenase.
Green spheres represent zinc atoms, blue side chains represent
substrate-binding domain, and purple side chains represent the
catalytic part of NAD
-binding domain (His51 and Thr48). The proximity between
alcohol and NAD+ is highlighted.
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