Peroxiredoxin is a family of thiol-specific antioxidants that catalyze the
reduction of hydrogen peroxide and organic peroxide into water or
corresponding alcohols, as in: 2 R'SH + ROOH = R'-S-S--R' + H2O + ROH.
Although peroxiredoxins do not have catalytic activities as high as other typical
antioxidant enzymes (e.g. glutathione-dependent peroxidases and catalases), they
are universally expressed at high levels. This is consistent with their critical roles
in biological metabolism (1).
In humans, six peroxiredoxin isomers are currently known. They
can be divided into three major subclasses: typical 2-cysteine Prdx, atypical
2-Cys Prdx, and 1-Cys Prdx . Thioredoxin peroxidase B (TPx-B), also known
as peroxirecoxin-2, is a typical 2-Cys Prdx. It is the third most abundant protein
in the human erythrocyte. The crystalline structure of this decameric protein has
been determined to 1.7 Å resolution. It is composed of five dimers (198 amino
acids in each monomer), linked end to end primarily via hydrophobic interactions, forming
a shape of toroid (Fig.1). This decamer is proposed to represent an intermediate in the
peroxidase reaction cycle (2).
All peroxiredoxins carry out a two-step peroxidase reaction at a
conserved, fully folded active site, centered around a redox-active
cysteine called the peroxidatic cysteine (Fig.2). The first step of the
reaction is common among the three peroxiredoxin classes. During
this step, the peroxidatic cysteine attacks the peroxide substrate and
is oxidized into sulfenic acid. The second step of the reaction involves
the regeneration of a cysteine thiol group from sulfenic acid; this step
distinguishes the three enzyme classes (1).
During the regeneration step of cysteine thiol for typical 2-Cys Prxs, the
sulfenic acid from one subunit is attacked by the resolving cysteine located
in the C-terminus of a second subunit (Fig. 2). In the case of Trx-B, the
redox-active Cys-51 is first oxidized to Cys-SOH (cysteine sulphinic acid).
Then, Cys-SOH rapidly reacts with Cys-172-SH (approximately 10 Å
away from Cys-51) from another subunit to form an intermolecular disulfide
bond within a homodimer (Fig.3). The enzyme may be regenerated as a result
of the reduction of the disulfide by one of several thiol-containing reductants
R’-SH (e.g. thioredoxin, AhpF). This regeneration marks the completion of
one catalytic cycle (1). One conclusion drawn from this mechanism is that the
oxidation of Cys51 appears to have trapped the structure in a stable decamer.
This stabilized form occurs under oxidative stress. It also implies that the catalytic
cycle of 2-Cys Prdx requires significant conformational changes. Similar
decameric structures of TPx-B have been observed under electron microscopy,
showing an association between the protein and erythrocyte membrane (2).
References
(1) Hall, et al. (2009). Typical 2-Cys peroxiredoxins--structures, mechanisms
and functions. FEBS Journal 276, 2469-2477.
(2) Schroder, et al. (2000). Crystal structure of decameric 2-Cys peroxiredoxin
from human erythrocytes at 1.7 Å resolution. Structure
8, 605-615.
(3) PDBID 1qmv
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Figure 1. An illustration of the Trx-B decamer in the shape of a toroid.
Five dimers are linked mainly by hydrophobic interactions, forming a
pentagonal ring. The coloring emphasizes the homologous structure of the
ten chains, but is otherwise arbitrary.
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Figure 2. A ribbon diagram of a dimer of Trx-B. The spheres
colored green show the peroxidatic cysteine, and spheres
colored red show the resolving cysteine. Each 198 amino acid
monomer adopts an α/β fold.
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Figure 3. An animated view zooming in on the dimer where the peroxidatic
cycteine and resolving cysteine form a disulfide bond. The cysteine residues
are presented as balls and sticks. The sulfur atoms forming a disulfide
bond are highlighted in yellow.
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