Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gi|323849 (M38329) replicase [Encephalomyoc... 459 2.5e-58 1
gi|323859 (M54935) polyprotein [Encephalomy... 459 2.2e-56 1
sp|P03304|POLG_EMCV GENOME POLYPROTEIN (COAT PROTEINS... 459 3.0e-56 1
pir||S35961 capsid polyprotein precursor - en... 459 3.0e-56 1
gi|323861 (M81861) viral polyprotein [Encep... 459 3.0e-56 1
sp|P17593|POLG_EMCVB GENOME POLYPROTEIN (COAT PROTEINS... 458 4.1e-56 1
pir||GNNYED genome polyprotein - encephalomyo... 458 4.1e-56 1
gi|323853 (M22457) polyprotein region [Ence... 458 4.1e-56 1
sp|P17594|POLG_EMCVD GENOME POLYPROTEIN (COAT PROTEINS... 458 4.1e-56 1
gi|323857 (M37588) polyprotein [Encephalomy... 458 4.1e-56 1
pir||S55401 capsid polyprotein precursor - en... 458 4.1e-56 1
gi|347393 (L22089) polyprotein [Mengovirus] 456 7.8e-56 1
pir||A26100 genome polyprotein - murine polio... 207 1.1e-26 2
pir||S13554 genome polyprotein - murine polio... 207 7.2e-26 2
sp|P08545|POLG_TMEVG GENOME POLYPROTEIN (COAT PROTEINS... 207 7.2e-26 2
pir||GNNYTP genome polyprotein - murine polio... 207 7.2e-26 2
sp|P13899|POLG_TMEVD GENOME POLYPROTEIN (COAT PROTEINS... 205 1.4e-25 2
sp|P08544|POLG_TMEVB GENOME POLYPROTEIN (COAT PROTEINS... 205 1.4e-25 2
pir||GNNYTM genome polyprotein - murine polio... 205 1.4e-25 2
gnl|PID|e235404 (X96871) polyprotein [Equine Rhin... 134 1.2e-16 2
gnl|PID|e38282 (V01136) RNA polymerase [Foot-and... 131 3.7e-16 3
pir||S53119 RNA-dependent RNA polymerase - fo... 125 9.6e-16 3
gnl|PID|e236020 (X96870) polyprotein [Equine Rhin... 170 1.1e-15 1
gnl|PID|e235486 (X96870) polyprotein [Equine Rhin... 170 1.1e-15 1
gnl|PID|e8976 (X00429) p56a [Foot-and-mouth dis... 125 2.1e-15 3
sp|P03308|POLG_FMDVA GENOME POLYPROTEIN (NONSTRUCTURAL... 131 1.8e-14 3
sp|P49303|POLG_FMDVZ GENOME POLYPROTEIN (NONSTRUCTURAL... 125 3.3e-14 3
gnl|PID|e36317 (X00871) precursor P100 [Foot-and... 125 6.9e-14 3
sp|P03306|POLG_FMDV1 GENOME POLYPROTEIN (NONSTRUCTURAL... 125 9.8e-14 3
sp||POLG_FMDVS_2 [Segment 2 of 2] GENOME POLYPROTE... 123 1.6e-13 3
pir||JN0431 RNA-directed RNA polymerase (EC 2... 118 2.8e-13 3
sp|P03305|POLG_FMDVO GENOME POLYPROTEIN (NONSTRUCTURAL... 125 5.5e-13 3
pir||S02068 RNA-directed RNA polymerase (EC 2... 120 1.3e-12 3
prf||2207404A polyprotein [equine rhinovirus 1] 125 3.2e-09 2
gi|2231134 (L43052) polyprotein [equine rhin... 125 3.2e-09 2
>gi|323849 (M38329) replicase [Encephalomyocarditis virus]
Length = 142
Plus Strand HSPs:
Score = 459 (211.1 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 89/95 (93%), Positives = 91/95 (95%)
Query: 10 AAFPLDSTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGALSEKLTSITMLAVH 189
+ FPL+STLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPG LSEKLTSITMLAVH
Sbjct: 48 STFPLNSTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVH 107
Query: 190 SCKQEYDLLFAPFREVGVVVPSFESVEYRWRSLFW 294
S KQEYD LFAPFREVGVVVPSFESVEYRWRSLFW
Sbjct: 108 SGKQEYDRLFAPFREVGVVVPSFESVEYRWRSLFW 142
>gi|323859 (M54935) polyprotein [Encephalomyocarditis virus]
Length = 954
Plus Strand HSPs:
Score = 459 (211.1 bits), Expect = 2.2e-56, P = 2.2e-56
Identities = 89/95 (93%), Positives = 91/95 (95%)
Query: 10 AAFPLDSTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGALSEKLTSITMLAVH 189
+ FPL+STLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPG LSEKLTSITMLAVH
Sbjct: 860 STFPLNSTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVH 919
Query: 190 SCKQEYDLLFAPFREVGVVVPSFESVEYRWRSLFW 294
S KQEYD LFAPFREVGVVVPSFESVEYRWRSLFW
Sbjct: 920 SGKQEYDRLFAPFREVGVVVPSFESVEYRWRSLFW 954
>sp|P03304|POLG_EMCV GENOME POLYPROTEIN (COAT PROTEINS VP1 TO VP4; CORE
PROTEINS P2A TO P2C, P3A; GENOME-LINKED PROTEIN VPG; PICORNAIN 3C
(PROTEASE 3C) (P3C); RNA-DIRECTED RNA POLYMERASE P3D >pir||GNNYE
genome polyprotein - encephalomyocarditis virus >gi|61035 (X00463)
polyprotein [Encephalomyocarditis virus]
Length = 2290
Plus Strand HSPs:
Score = 459 (211.1 bits), Expect = 3.0e-56, P = 3.0e-56
Identities = 89/95 (93%), Positives = 91/95 (95%)
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